PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474587.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20721.8 Da    PI: 10.2709
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.4e-151049241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +ien+ nr vtf kRrng++KK +EL v+++aev  i+  
  XP_016474587.1 10 KIENQNNRLVTFLKRRNGVFKKENELVVMTGAEVGTIVCP 49
                    79********************************999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-19171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.75161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-19160IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-12323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVRKSIRLAK IENQNNRLVT FLKRRNGVFK KENELVVMTG AEVGTIVCPQ GSKPYSFGHP  60
NVNETINKYV GEERPPSPSS PGIDDKYVQM FRKANSRELN TRFNSRQDQL VFVLNLKIKL  120
KQMNKKVEIH QEWFKGPIEK INYTEASILK EGLEDLLLKV KNYGTERGYG YENGKWKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619329.11e-130PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_016474587.11e-130PREDICTED: agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-20AGAMOUS-like 61